Circulating tumour DNA profiling reveals heterogeneity of EGFR inhibitor resistance mechanisms in lung cancer patients

نویسندگان

  • Jacob J Chabon
  • Andrew D Simmons
  • Alexander F Lovejoy
  • Mohammad S Esfahani
  • Aaron M Newman
  • Henry J Haringsma
  • David M Kurtz
  • Henning Stehr
  • Florian Scherer
  • Chris A Karlovich
  • Thomas C Harding
  • Kathleen A Durkin
  • Gregory A Otterson
  • W Thomas Purcell
  • D Ross Camidge
  • Jonathan W Goldman
  • Lecia V Sequist
  • Zofia Piotrowska
  • Heather A Wakelee
  • Joel W Neal
  • Ash A Alizadeh
  • Maximilian Diehn
چکیده

Circulating tumour DNA (ctDNA) analysis facilitates studies of tumour heterogeneity. Here we employ CAPP-Seq ctDNA analysis to study resistance mechanisms in 43 non-small cell lung cancer (NSCLC) patients treated with the third-generation epidermal growth factor receptor (EGFR) inhibitor rociletinib. We observe multiple resistance mechanisms in 46% of patients after treatment with first-line inhibitors, indicating frequent intra-patient heterogeneity. Rociletinib resistance recurrently involves MET, EGFR, PIK3CA, ERRB2, KRAS and RB1. We describe a novel EGFR L798I mutation and find that EGFR C797S, which arises in ∼33% of patients after osimertinib treatment, occurs in <3% after rociletinib. Increased MET copy number is the most frequent rociletinib resistance mechanism in this cohort and patients with multiple pre-existing mechanisms (T790M and MET) experience inferior responses. Similarly, rociletinib-resistant xenografts develop MET amplification that can be overcome with the MET inhibitor crizotinib. These results underscore the importance of tumour heterogeneity in NSCLC and the utility of ctDNA-based resistance mechanism assessment.

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عنوان ژورنال:

دوره 7  شماره 

صفحات  -

تاریخ انتشار 2016